Breast milk: the first medicine that shapes your baby’s microbiota

From birth to the first 1,000 days: how breast milk and early nutrition shape the gut microbiota and long-term health

The invisible ecosystem that defines health

The microbiota is the collection of microorganisms—bacteria, viruses, fungi, and protozoa—that live in and on our bodies. Although invisible, this ecosystem plays a fundamental role in our overall health, especially from the first days of life. Numerous studies have shown how the microbiota supports the development of the immune system, the digestive tract, and even the nervous system.

The first 1,000 days: a crucial window of opportunity

Microbial colonization begins in the womb and continues throughout life. But the first 1,000 days—from conception to the toddler years—are critical. During this period, the composition of the microbiota can be shaped by several factors: type of delivery, exposure to antibiotics, and most importantly, infant nutrition.

Breast milk: the natural architect of eubiosis

According to Prof. Massimo Agosti, President of the Italian Society of Neonatology (SIN), the microbiota of a full-term breastfed infant is a model of eubiosis, meaning a balanced and healthy microbial environment. Breast milk is rich in oligosaccharides, prebiotic compounds that nourish beneficial bacteria such as Bifidobacteria and Lactobacilli.

Risks of dysbiosis in vulnerable newborns

When infants are born prematurely, via C-section, or treated in neonatal intensive care, the normal development of their microbiota can be disrupted, leading to dysbiosis. This imbalance is linked to serious conditions like sepsis and necrotizing enterocolitis, and even to long-term health issues such as neurodevelopmental disordersallergiesasthma, and obesity.

Direct breastfeeding makes a difference

Experts emphasize that direct breastfeeding provides additional microbial benefits, as the mother, infant, and environment interact in real-time. This not only enhances microbial diversity but also helps strengthen the infant’s immune system from the start.

Probiotics, prebiotics, and postbiotics: allies for the gut

In cases where direct breastfeeding is not possible, or when there’s an increased risk of dysbiosis, probioticsprebiotics, and postbiotics may help. These supplements can modulate the microbiota, supporting gut health and reducing the risk of disease. It’s also essential to limit the unnecessary use of antibiotics during this sensitive period.

An investment in lifelong well-being

A healthy microbiota is not just about gut health—it’s a foundation for lifelong immunity and development. Promoting breastfeeding and responsible microbiota care from day one means investing in the future well-being of every child.


Frequently Asked Questions

1. What is the neonatal microbiota?
It’s the set of microorganisms that colonize a newborn’s body and support immune and digestive development.

2. When does the microbiota start forming?
It starts in the womb but becomes especially important in the first 1,000 days after birth.

3. Why is breast milk important for the microbiota?
It contains unique nutrients and bacteria that promote the growth of healthy gut flora.

4. What is dysbiosis?
An imbalance in the gut microbiota that can increase the risk of infections and chronic diseases.

5. Do C-section babies have different microbiota?
Yes, they tend to have less diverse and less beneficial bacteria compared to vaginally delivered babies.

6. Can formula feeding affect the microbiota?
Yes, it lacks the complexity of breast milk and may lead to less optimal microbial development.

7. What are probiotics?
Live beneficial bacteria that help restore and maintain a healthy gut.

8. What are postbiotics?
Bioactive compounds produced by probiotics that enhance their health effects.

9. Can antibiotics harm a newborn’s microbiota?
Yes, especially if used unnecessarily or excessively in early life.

10. How can I protect my baby’s microbiota?
Encourage breastfeeding, avoid overuse of antibiotics, and consult a doctor about microbiota-supporting supplements.

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